The Galapagos Islands waters have the Humboldt Current's influence that brings cold waters especially during the mist rainy season (cool weather) from July to December. The warm season is during the months of January to June. The southeast trade winds become weaker and the water from the Panama Basin remains warm. During this season there is more of a tropical climate with some occasional rains. "El Niņo" current may cause a much greater flow of warm waters, making the surface warmer and rainfall increase.
January - June: 70°F - 80°F (20C - 26C)
July - December: 65°F - 75°F (18C- 23C)
See Galapagos trip options here: Galapagos Islands Travel
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